BioImge Informatics Tools

General Image Analysis Tools:

• ImageJ (Java)

• CellProfiler (Matlab)

• Insight Segmentation and Registration Toolkit (ITK) (C++)

Image Analysis and Processing Algorithms:

• Boguslaw Obara - BioImage Informatics (Matlab)

• MATLAB Functions for Computer Vision and Image Analysis (Matlab)

• VXL - C++ Libraries for Computer Vision Research and Implementation (C++)

• Color Conversion Formulas (Matlab)

• Color Conversion Algorithms (C++)

Image Formats:

• LOCI - Bio-Formats (Java/Matlab)

• BioFormats (C++/Matlab)

Image DataBase:

• BISQUE (Python)

• The Open Microscopy Environment (OME) (Java)

3D Image Visualization:

• VisBio (Java)

• Visualization Toolkit (VTK) (C++)

• bioView3D (C++)

• V3D (?)

Image Analysis and Processing Tutorials:

• Efg's Image Processing Page

• Introduction to Digital Image Processing

• Image Processing Fundamentals

• Image Processing Operator Worksheets